Here are a few papers dealing with genetic epidemiology that I should have read for a while:

• Johnson et al., Accounting for multiple comparisons in a genome- wide association study (GWAS), BMC Genomics 2010, 11:724
• Wang, Direct assessment of multiple testing correction in case-control association studies with related individuals, Genetic Epidemiology 2010 35(1):70
• Manning et al., Meta-analysis of gene-environment interaction: joint estimation of SNP and SNP × environment regression coefficients, Genetic Epidemiology 2010 35(1):11
• Han et al., Postassociation cleaning using linkage disequilibrium information, Genetic Epidemiology 2010 35(1):1
• Schwender et al., Testing SNPs and sets of SNPs for importance in association studies, Biostatistics 2010 12(1):18
• Kutalik et al., Methods for testing association between uncertain genotypes and quantitative traits, Biostatistics 2010 12(1):1
• Mueller et al., QuACN: an R package for analyzing complex biological networks quantitatively, Bioinformatics 2010 27(1):140
• García-Alcalde et al., Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data, Bioinformatics 2010 27(1):137
• Abo et al., Automated construction and testing of multi-locus gene-gene associations, Bioinformatics 2010 27(1):134
• Jia et al., dmGWAS: dense module searching for genome-wide association studies in protein-protein interaction networks, Bioinformatics 2010 27(1):95
• He and Lin, A variable selection method for genome-wide association studies, Bioinformatics 2010 27(1):1
• de Moor et al., Meta-analysis of genome-wide association studies for personality, Molecular Psychiatry 2010
• Caceres et al., Multiple correspondence discriminant analysis: An application to detect stratification in copy number variation, Statistics in Medicine 2010 29(30):3284
• Bremer et al., Copy number variation characteristics in subpopulations of patients with autism spectrum disorders, American Journal of Medical Genetics Part B: Neuropsychiatric Genetics 2010
• Kistner-Griffin et al., Parent-of-origin effects of the serotonin transporter gene associated with autism, American Journal of Medical Genetics Part B: Neuropsychiatric Genetics 2010
• Lee et al., Control of Population Stratification by Correlation-Selected Principal Components, Biometrics 2010
• Karwautz et al., Gene–environment interaction in anorexia nervosa: relevance of non-shared environment and the serotonin transporter gene, Molecular Psychiatry 2010
• So and Sham, A Unifying Framework for Evaluating the Predictive Power of Genetic Variants Based on the Level of Heritability Explained, PLoS Genetics 2010
• Leoutsakos et al., Incorporating scientific knowledge into phenotype development: Penalized latent class regression, Statistics in Medicine 2010
• Milne et al., Flapjack–graphical genotype visualization, Bioinformatics 2010 26(24):3133
• Hoehndorf et al., Interoperability between phenotype and anatomy ontologies, Bioinformatics 2010 26(24):3112
• Yang and Bickel, Minimum Description Length and Empirical Bayes Methods of Identifying SNPs Associated with Disease, Collection of Biostatistics Research Archive 2010
• Ilott et al., Genetic influences on attention deficit hyperactivity disorder symptoms from age 2 to 3: A quantitative and molecular genetic investigation, BMC Psychiatry 2010 10:102
• Furney et al., Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer’s disease, Molecular Psychiatry 2010
• Dineen et al., Ensemble approach combining multiple methods improves human transcription start site prediction, BMC Genomics 2010, 11:677
• Rijsdijk et al., Heritability estimates for psychotic symptom dimensions in twins with psychotic disorders, American Journal of Medical Genetics Part B: Neuropsychiatric Genetics 2010 156(1):89